2015 PRISM Publications

Galka, M.M., Rajagopalan, N., Buhrow, L.M., Nelson, K.M., Switala, J., Cutler, A.J., Palmer, D.R.J., Loewen, P.C., Abrams, S.R. and Loewen, M.C. (2015) Identification of Interactions between Abscisic Acid and Ribulose-1,5-bisphosphate Carboxylase/Oxygenase. PLOS One, 10(7): e0133033.

Kuppala, R., Borrelli, S., Slowski, K., Sanders, D.A.R., Ravindranathan Kartha, K.P., Pinto, B.M.* (2015) Synthesis and biological evaluation of nonionic substrate mimics of UDPGalp as candidate inhibitors of UDP galactopyranose mutase (UGM). Biorg Med Chem Lett, 25(9):1995-7.

van Straaten, K.E., Kuttiyatveetil, J.R., Sevrain, C.M., Villaume, S.A., Jiménez-Barbero, J., Linclau, B., Vincent, S.P. and Sanders, D.A.R. (2015) Structural Basis of Ligand Binding to UDP-Galactopyranose Mutase from Mycobacterium tuberculosis Using Substrate and Tetrafluorinated Substrate Analogues. J Am Chem Soc, 137:1230-1244.

Forget, S.M., Jee, A., Smithen, D.A., Jagdhane, R., Anjum, S., Beaton, S.A., Palmer, D.R.J., Syvitski, R.T. and Jakeman, D.L. (2015) Kinetic evaluation of glucose 1-phosphate analogues with a thymidylyltransferase using a continuous coupled enzyme assay. Organic and Biomolecular Chemistry, 13:866-875.

Kalynych, S., Cherney, M., Bostina, M., Rouiller,I. and Cygler, M. (2015). Quaternary structure of WzzB and WzzE Polysaccharide Co-Polymerases. Protein Sci., 24:58-69.

Grishin, A.M., Beyrakhova, K.A. and Cygler, M. (2015). Structural insight into effector proteins of gram-negative bacterial pathogens that modulate the phosphoproteome of their host. Protein Sci. 24(5):604-20.

D'Costa, V.M., Braun, V., Landekic, M., Shi, R., Proteau, A., McDonald, L., Cygler, M., Grinstein, S. and Brumell, J.H. (2015) Salmonella Disrupts Host Endocytic Trafficking by SopD2-Mediated Inhibition of Rab7. Cell Rep., 12(9):1508-18.

Jakova, E. and Lee, J.S. (2015). Superposition of an AC field improves discrimination between peptides in nanopore analysis. Analyst, 40(14):4813-9.

Kakish, J., Tavassoly, O. and Lee J.S. (2015). Rasagiline a suicide inhibitor of Monoamine oxidases, binds reversibly to alpha-synuclein. ACS Chem. Neurosci. 6:347-355.

Guo, M., Hundseth, K., Ding, H., Vidhyasagar, V., Inoue, A., Nguyen, C. H., Zain, R., Lee, J. S. and Wu, Y. (2015) A Distinct Triplex DNA Unwinding Activity of ChlR1 Helicase. J Biol Chem. 290(8):5174-89. 

Ghavidel, A., Baxi, K., Ignatchenko, V., Prusinkiewicz, M., Arnason, T.G., Kislinger, T., Carvalho, C.E. and Harkness, T.A. (2015) A Genome Scale Screen for Mutants with Delayed Exit from Mitosis: Ire1-Independent Induction of Autophagy Integrates ER Homeostasis into Mitotic Lifespan. PLoS Genet. 11:e1005429.

Harkness, T.A. (2015) Living longer through mitochondrial housekeeping. Cell Cycle 14:1770. 

Jiao, R., Postnikoff, S., Harkness, T.A., Arnason, T.G. (2015) The SNF1 Kinase Ubiquitin-associated Domain Restrains Its Activation, Activity, and the Yeast Life Span. J Biol Chem. 290:15393-15404. 

Choudhary, P., and Loewen, M.C., (2015) Evidence of a role for α-arrestin Ldb19 in S. cerevisiae mating projection and zygote formations. Cell Biol. Int. Aug 27. doi: 10.1002/cbin.10541. [Epub ahead of print].

Choudhary, P. and Loewen, M.C. (2015) Quantification of mutation-derived bias for alternate mating functionalities of the Saccharomyces cerevisiae Ste2p pheromone receptor. J Biochem. 2015 Jul 30. pii: mvv072. [Epub ahead of print].

Galka MM, Rajagopalan N, Buhrow LM, Nelson KM, Switala J, Cutler AJ, Palmer DR, Loewen PC, Abrams SR, Loewen MC. (2015) Identification of Interactions between Abscisic Acid and Ribulose-1,5-Bisphosphate Carboxylase/Oxygenase. PLoS One. 10(7):e0133033.

Feng, Y., Love, R.P., Ara, A., Baig, T.T., Adolph, M.B. and Chelico, L. (2015) Natural polymorphisms and oligomerization of human APOBEC3H contribute to single-stranded DNAscanning ability. J. Biol. Chem. Sep 22. pii: jbc.M115.666065. [Epub ahead of print].

Kamstra, R.L., Freywald, A. and Wely B. Floriano, W.B. (2015) N-(2,4)-dinitrophenyl-L-arginine Interacts with EphB4 and Functions as an EphB4 Kinase Modulator. Chem Biol Drug Des. 86(4):476-86.

Wang, R., Freywald, A., Chen, Y., Xu, J., Tan, X. Xiang, J. (2015) Transgenic 4-1BBL-engineered vaccine stimulates potent Gag-specific therapeutic and long-term immunity via increased priming of CD44+CD62Lhigh IL-7R+ CTLs with up- and downregulation of anti- and pro-apoptosis genes. Cell Mol Immunol. 12(4):456-65.

Jessulat, M., Malty, R.H., Nguyen-Tran, D.H., Deineko, V., Aoki, H., Vlasblom, J., Omidi, K., Jin, K., Minic, Z., Hooshyar, M., Burnside, D., Samanfar, B., Phanse, S., Freywald, T., Prasad, B., Zhang, Z., Vizeacoumar, F., Krogan, N.J., Freywald, A., Golshani, A. and Babu, M. (2015) Spindle Checkpoint Factors Bub1 and Bub2 Promote DNA Double-Strand Break Repair by Nonhomologous End Joining. Mol Cell Biol. 35(14):2448-63.

Jin, K., Musso, G., Vlasblom, J., Jessulat, M., Deineko, V., Negroni, J., Mosca, R., Malty, R., Nguyen-Tran, D.H., Aoki, H., Minic, Z., Freywald, T., Phanse, S., Xiang, Q., Freywald, A., Aloy, P., Zhang, Z. and Babu, M. (2015) Yeast mitochondrial protein-protein interactions reveal diverse complexes and disease-relevant functional relationships. J Proteome Res. 14(2):1220-37.

Yang, Y., Sebra, R., Pullman, B.S., Qiao, W., Peter, I., Desnick, R.J., Geyer, C.R., DeCoteau, J.F., Scott, S.A. (2015) Quantitative and multiplexed DNA methylation analysis using long-read single-molecule real-time bisulfite sequencing (SMRT-BS). BMC Genomics, 6:350. doi: 10.1186/s12864-015-1572-7.

Poorghorban, M., Karoyo, A.H., Grochulski, P., Verral,l R.E., Wilson, L.D. and Badea, I. (2015) A 1H NMR Study of Host/Guest Supramolecular Complexes of a Curcumin Analogue with β-Cyclodextrin and a β-Cyclodextrin-Conjugated Gemini Surfactant. Mol Pharm. 12(8):2993-3006.

Poorghorban, M., Das, U., Alaidi, O., Chitanda, J.M., Michel, D., Dimmock, J., Verrall, R., Grochulski, P. and Badea, I. (2015) Characterization of the host-guest complex of a curcumin analog with β-cyclodextrin and β-cyclodextrin-gemini surfactant and evaluation of its anticancer activity. Int J Nanomedicine, 10:503-15.

Lee, M.J., Liu, H., Barker, B.M., Snarr, B.D., Gravelat, F.N., Al Abdallah, Q., Gavino, C., Baistrocchi, S.R., Ostapska, H., Xiao, T., Ralph, B., Solis, N.V., Lehoux, M., Baptista, S.D., Thammahong, A., Cerone, R.P., Kaminskyj, S.G., Guiot, M.C., Latgé, J.P., Fontaine, T., Vinh, D.C., Filler, S.G. and Sheppard, D.C. (2015) The Fungal Exopolysaccharide Galactosaminogalactan Mediates Virulence by Enhancing Resistance to Neutrophil Extracellular Traps. PLoS Pathog, 22;11(10):e1005187.

Goel, R.K. and Lukong, K.E. (2015) Tracing the footprints of the breast cancer oncogene BRK - Past till present. Biochim Biophys Acta. 1856(1):39-54.

Li, J., Biss, M., Fu, Y., Xu, X., Moore, S.A. and Xiao, W. (2015) Two duplicated genes DDI2 and DDI3 in budding yeast encode a cyanamide hydratase and are induced by cyanamide. J Biol Chem., 290(20):12664-75.

Hlynialuk, C.J., Ling, B., Baker, Z.N., Cobine, P.A., Yu, L.D., Boulet, A., Wai, T., Hossain, A., El Zawily, A.M., McFie, P.J., Stone, S.J., Diaz, F., Moraes, C.T., Viswanathan, D., Petris, M.J. and Leary, S.C. (2015) The Mitochondrial Metallochaperone SCO1 Is Required to Sustain Expression of the High-Affinity Copper Transporter CTR1 and Preserve Copper Homeostasis. Cell Rep., pii: S2211-1247(15)00032-7. doi: 10.1016/j.celrep.2015.01.019. [Epub ahead of print]

Hirsch, C.L., Coban Akdemir, Z., Wang, L., Jayakumaran, G., Trcka, D., Weiss, A., Hernandez, J.J., Pan, Q., Han, H., Xu, X., Xia, Z., Salinger, A.P., Wilson, M., Vizeacoumar, F., Datti, A., Li, W., Cooney, A.J., Barton, M.C., Blencowe, B.J., Wrana, J.L. and Dent, S.Y. (2015) Myc and SAGA rewire an alternative splicing network during early somatic cell reprogramming. Genes Dev., 29(8):803-16. doi: 10.1101/gad.255109.114. Epub 2015 Apr 15.

Ding, H., Guo, M., Vidhyasagar, V., Talwar, T. and Wu, Y. (2015) The Q Motif Is Involved in DNA Binding but Not ATP Binding in ChlR1 Helicase. PLoS One, 10(10):e0140755. doi: 10.1371/journal.pone.0140755. eCollection 2015.

Zhang, C., Li, Z., Zhang, X., Yuan, L., Dai, H. and Xiao, W. (2015) Transcriptomic profiling of chemical exposure reveals roles of Yap1 in protecting yeast cells from oxidative and other types of stresses. Yeast. doi: 10.1002/yea.3135. [Epub ahead of print].

Li, S., Zhang, X., Zhang, X.Y., Xiao, W., Berry, J.O., Li, P., Jin, S., Tan, S., Zhang, P., Zhao, W.Z. and Yin, L.P. (2015) Expression of Malus xiaojinensis IRT1 (MxIRT1) protein in transgenic yeast cells leads to degradation through autophagy in the presence of excessive iron. Yeast, 32(7):499-517.

Xue, C., Liang, K., Liu, Z., Wen, R. and Xiao, W. (2015) Similarities and differences between Arabidopsis PCNA1 and PCNA2 in complementing the yeast DNA damage tolerance defect. DNA Repair (Amst), 28:28-36.

Xu, X., Blackwell, S., Lin, A., Li, F., Qin, Z. and Xiao, W. (2015) Error-free DNA-damage tolerance in Saccharomyces cerevisiae. Mutat Res Rev 764:43-50.

Kakish, J., Lee, D., Lee, J.S. (2015) Drugs that bind to alpha- Synuclein: Neuroprotectiveor Neurotoxic? ACS Chem. Neurosci., 2015:1930-1940.

Kakish, J., Tavassoly, O., Lee, J.S. (2015) Rasagiline, a suicide inhibitor of MAO-B, binds to alpha-synuclein. ACS Chem. Neurosci., 2015: 347-355.

Arnason, T., Harkness, T. (2015) Development, Maintenance, and Reversal of Multiple Drug Resistance: At the Crossroads of TFPI1, ABC Transporters, and HIF1. Cancers (Basel). 2015 Oct 16;7(4):2063-82.

Bhat, A., Wu, Z., Maher, V.M., McCormick, J.J. and Xiao, W. (2015) Rev7/Mad2B plays a critical role in the assembly of a functional mitotic spindle. Cell Cycle 14: 3929-3938.

Xu, X., Blackwell, S., Lin, A., Li, F., Qin, Z. and Xiao, W. (2015) Error-free DNA-damage tolerance in Saccharomyces cerevisiae. Mutat. Res. - Rev. 764: 43-50.

Lucyshyn D, Huang SH, Kobryn K. (2015) Spring loading a pre-cleavage intermediate for hairpin telomere formation. Nucl. Acids Res. 43(12):6062-74.

Viveky, N., Thorpe, L., Alcorn, J., Hadjistavropoulos, T., Whiting, S.J., (2015) Safety evaluation of flaxseed lignan supplementation in older adults residing in long term care homes. Journal of Nursing Home Research, 1:84-88.

Bachtold, K.A., Alcorn, J., Matus, J.L., Boison, J.O., Woodbury, M.R. (2015) Pharmacokinetics and lung and muscle concentrations of tulathromycin following subcutaneous administration in white-tailed deer (Odocoileus virginianus). Journal of Veterinary Pharmacology and Therapeutics, 39(3):292-8.

Bachtold, K., Alcorn, J., Matus, J., Boison, J., Woodbury, M. (2015) Pharmacokinetics of tulathromycin after subcutaneous injection in North American bison (Bison bison). Journal of Veterinary Pharmacology and Therapeutics, 38(5):471-4.

Gagnon, K., Caine, S., Samadi, N., Martinson, M., van der Loop, M., Alcorn, J., Chapman, D., Belev, G., Nichol, H. (2015). Design and testing of a live mouse restraint for synchrotron computed tomography imaging. Journal of Synchrotron Radiation, 22:1297-1300.

Kaur Mukker, J., Singh, R.S.P., Muir, A.D., Krol, E.S., Alcorn, J. (2015) Comparative pharmacokinetics of purified flaxseed and associated mammalian lignans in male Wistar rats. British Journal of Nutrition, 113(5):749-57.

Hucl, P., Briggs, C., Graf, R.J. and Chibbar, R.N. (2015) Genetic gains in agronomic and selected end-use quality traits over a century of plant breeding of Canada Western Red Spring wheat. Cereal Chemistry 92: 537 – 543.