2016 PRISM Publications

Guo, M., Vidhyasagar, V., Talwar, T., Kariem, A., Wu, Y. (2016) Mutational analysis of FANCJ helicase. Methods. S1046-2023(16)30102-5. doi: 10.1016/j.ymeth.2016.04.023. [Epub ahead of print].

Vidhyasagar, V., He, Y., Guo, M., Ding, H., Talwar, T., Nguyen, V., Nwosu, J., Katselis, G., Wu, Y. (2016) C-termini are essential and distinct for nucleic acid binding of human NABP1 and NABP2. Biochim Biophys Acta. (2016) 1860(2):371-83.

Skovpen, Y.V., Conly, C.J.T., Sanders, D.A.R. and Palmer, D.R.J. (2016) Biomimetic design results in a potent inhibitor of dihydrodipicolinate synthase from Campylobacter jejuni. Journal of the American Chemical Society, 138, 2014-2020.

Beyrakhova, K.A., van Straaten, K., Li, L., Boniecki, M.T., Anderson, D.H., Cygler, M. (2016) Structural and functional investigations of the effector protein LpiR1 from Legionella pneumophila. J. Biol. Chem. May 17. [Epub ahead of print].

MacKenzie, K.D., Wang, Y., Shivak, D. J., Wong, CS., Hoffman, L. J. L., Lam, S.,Kroger, C., Cameron, A.D.S., Townsend, H.G.G., Köster, W., and White, A.P. (2015). Bistable expression of CsgD in Salmonella enterica serovar Typhimurium connects virulence to persistence. Infect. Immun. 83:2312-2326.

Dmitriev, O.Y., Lutsenko, S., and Muyldermans, S. (2016) Nanobodies as Probes for Protein Dynamics in Vitro and in Cells. J. Biol. Chem., 291: 3767-3775.

Buhrow, L.M., Cram, D., Tulpan, D., Foroud, N.A., Loewen, M.C. (2016) Exogenous Abscisic Acid and Gibberellic Acid Elicit Opposing Effects on Fusarium graminearum Infection in Wheat, Phytopathology. 2016 Jun 17:PHYTO01160033R. [Epub ahead of print]

Buhrow, L.M., Clark, S.M., Loewen, M.C. (2016) Identification of an attenuated barley stripe mosaic virus for the virus-induced gene silencing of pathogenesis-related wheat genes. Plant Methods 12:12. doi: 10.1186/s13007-016-0112-z.

Li, Q., Shi, X., Ye, S., Wang, S., Chan, R., Harkness, T.A., Wang, H. (2016) A short motif in Arabidopsis CDK inhibitor ICK1 decreases the protein level likely through a ubiquitin-independent mechanism. Plant J. May 27.

Malo, M.E., Postnikoff, S.D., Arnason, T.G., Harkness, T.A. (2016) Mitotic degradation of yeast Fkh1 by the Anaphase Promoting Complex is required for normal longevity, genomic stability and stress resistance. Aging (Albany NY). 8(4):810-30.

Tan, S., Liu, F., Pan, X., Zang, Y., Jin, F., Zu, W., Q, X., Xiao, W. and Yin, L. (2016) CSN6, a subunit of the COP9 signal;osome, is involved in early response to iron deficiency in Oryza sativa. Sci. Rep.  6: 25485. doi: 10.1038/srep25485.

Xu, X., Lin, A., Zhou, C., Blackwell, S., Zhang, Y., Wang, Z., Feng, Q., Guan, R., Hanna, M.D., Chen, Z. and Xiao, W. (2016) Involvement of budding yeast Rad5 in translesion DNA synthesis through physical interaction with Rev1. Nucleic Acids Res. 44: 5231-5245.

Zhang, C., Li, Z., Zhang, X., Yuan, L., Dai, H. and Xiao, W. (2016) Transcriptomic profiling of chemical exposure reveals roles of Yap1 in protecting yeast cells from oxidative and other types of stresses. Yeast 33: 5-19.

Guo, H., Wen, R., Liu, Z., Datla, R. and Xiao, W. (2016) Molecular cloning and functional characterization of two Brachypodium distachyon UBC13 genes whose products promote K63-linked polyubiquitination. Front. Plant Sci. 6:1222.

Ward, A.K., Mellor, P., Smith, S., Kendall, S., Just, N.A., Vizeacoumar, F.S., Sarker, S., Phillips, Z., Alvi, R., Saxena, A., Vizeacoumar, F.J., Carlsen, S.A. and Anderson, D.H. (2016) Epigenetic silencing of CREB3L1 by DNA methylation is associated with high-grade metastatic breast cancers with poor prognosis and is prevalent in triple negative breast cancers. Breast Cancer Res. 2016 Jan 25;18(1):12.

Goel, R.K. and Lukong, K.E. (2016) Understanding the cellular roles of Fyn-related kinase (FRK): implications in cancer biology. Cancer Metastasis Rev. Jun;35(2):179-99. doi: 10.1007/s10555-016-9623-3.

Wang, R., Xu, A., Zhang, X., Wu, J., Freywald, A., Xu, J. and Xiang, J. (2016) Novel exosome-targeted T-cell-based vaccine counteracts T-cell anergy and converts CTL exhaustion in chronic infection via CD40L signaling through the mTORC1 pathway. Cell Mol Immunol. Jun 6. doi: 10.1038/cmi.2016.23. [Epub ahead of print]

Zhao, T., Tang, X., Umeshappa, C.S., Ma, H., Gao, H., Deng, Y., Freywald, A., Xiang, J. (2016) Simulated Microgravity Promotes Cell Apoptosis through Suppressing Uev1A/TICAM/TRAF/NF-κB-Regulated Anti-Apoptosis and p53/PCNA- and ATM/ATR-Chk1/2-Controlled DNA-Damage Response Pathways. J Cell Biochem. Feb 16. doi: 10.1002/jcb.25520. [Epub ahead of print]

Xu, A., Bhanumathy, K.K., Wu, J., Ye, Z., Freywald, A., Leary, S.C., Li, R. and Xiang, J. (2016) IL-15 signaling promotes adoptive effector T-cell survival and memory formation in irradiation-induced lymphopenia. Cell Biosci. May 6;6:30. doi: 10.1186/s13578-016-0098-2. eCollection 2016.

Brandt, C., McFie, P.J. and Stone, S,J. (2016) Biochemical characterization of human acyl coenzyme A: 2-monoacylglycerol acyltransferase-3 (MGAT3). Biochem Biophys Res Commun. Jul 1;475(3):264-70. doi: 10.1016/j.bbrc.2016.05.071. Epub 2016 May 13.

Paul, J., Toosi, B., Vizeacoumar, F.S., Bhanumathy, K., Li, Y., Gerger, C., El Zawily, A., Freywald, T., Anderson, D., Mousseau, D., Kanthan, R., Zhang, Z., Vizeacoumar, F.J. and Freywald, A. (2016) Targeting synthetic lethality between the SRC kinase and the EPHB6 receptor may benefit cancer treatment. Oncotarget. Accepted June 17, 2016.

Huang, S.H. and Kobryn, K. (2016) The Borrelia burgdorferi telomere resolvase, ResT, anneals ssDNA complexed with its cognate ssDNA-binding protein. Nucl. Acids Res. 44(11):5288-98.

Cunningham, C.E., Li, S., Vizeacoumar, F.S., Bhanumathy, K.K., Lee, J.S., Parameswaran, S., Furber, L., Abuhussein, O., Paul, J.M., McDonald, M., Templeton, S.D., Shukla, H., El Zawily, A.M., Boyd, F., Alli, N., Mousseau, D.D., Geyer, C. R., Bonham, K., Anderson, D.H., Yan, J., Yu-Lee, L.Y., Weaver, B.A., Uppalapati, M., Ruppin, E., Sablina, A., Freywald, A. and Vizeacoumar, F.J. (2016) Therapeutic relevance of the protein phosphatase 2A in cancer. Oncotarget. 7(38):61544-61561.

El Zawily, A.M., Toosi, B.M., Freywald, T., Indukuri, V.V., Vizeacoumar, F.J., Leary, S.C., Freywald, A. (2016) The intrinsically kinase-inactive EPHB6 receptor predisposes cancer cells to DR5-induced apoptosis by promoting mitochondrial fragmentation. Oncotarget. 7(47):77865-77877.

Sowole, M.A. Simpson, S., Skovpen, Y.V., Palmer, D.R.J. and Konermann, L. (2016) Evidence for Allosteric Enzyme Regulation via Changes in Conformational Dynamics: An H/D Exchange Investigation of Dihydrodipicolinate Synthase. Biochemistry, 55, 5413-5422.

Alharbi, H.A., Alcorn, J., Almousa, A., Giesy, J.P., Wiseman, S. (2016) Toxicokinetics and toxodynamics of chlorpyrifos is altered in embryos of Japanes medaka exposed to oil sands process-affected water: evidence for inhibition of p-glycoprotein. Journal of Applied Toxicology, (wileyonlinelibrary.com; DOI: 10.1002/jat.3397).

Whiting, S.J., Cheng, P.-C., Thorpe, L., Viveky, N., Alcorn, J., Hadjistavropoulos, T., Dahl, W.J. (2016). Hand grip strength as a nutritional assessment tool in long-term care homes. Journal of Ageing Research and Healthcare, 1(2): http://www.openaccesspub.org/journal/article_show/350/38

Benmansour, P., Billinsky, J., Duke-Novakovski, T., Alcorn, J. (2016) Pharmacokinetics of a short remifentanil infusion in isoflurane-dexmedetomidine anaesthetized horses. Research in Veterinary Science, 107:202-6.

Boison, J.O., Bachtold, K., Matus, J., Alcorn, J., Woodbury, M. (2016) A single laboratory-validated LC-MS method for the analysis of tulathromycin residues in bison and deer sera and selected tissues of white-tailed deer. Drug Testing and Analysis, 8(5-6)584-95.

Alharbi, H.A., Saunders, D.M.V., Almousa, A., Alcorn, J., Pereira, A.S., Martin, J.W., Giesy, J.P., Wisemam, S.B. (2016) Inhibition of ABC transport proteins by oil sands process affected water. Aquatic Toxicology, 170:81-88.

Qin, Z., Bai, Z., Sun, Y., Niu, X. and Xiao, W. (2016) PCNA-Ub polyubiquitination inhibits cell proliferation and induces cell-cycle checkpoints. Cell Cycle, 15(24):3390-3401.

Fan, L. and Xiao, W. (2016) The Pol30-K196 residue plays a critical role in budding yeast DNA postreplication repair through interaction with Rad18. DNA Repair 47: 42-48.

Guo, H., Wen, R., Wang, Q., Datla, R. and Xiao, W. (2016) Three Brachypodium distachyon Uev1s promote Ubc13-mediated Lys63-linked polyubiquitination and confer different functions. Front. Plant Sci. 7: 1551.

Kakish, J., Allen, K.J.H., Harkness, T.A,, Krol, E.S. and Lee, J.S. (2016) Novel Dimer Compounds That Bind α-Synuclein Can Rescue Cell Growth in a Yeast Model Overexpressing α-Synuclein. A Possible Prevention Strategy for Parkinson’s Disease. ACS Cherm. Neurosci. 7(12):1671-1680.

Wittkopp, C.J., Adolph, M.B., Wu, L.I., Chelico, L., Emerman, M.  (2016) A Single Nucleotide Polymorphism in Human APOBEC3C Enhances Restriction of Lentiviruses. PLoS Pathog 12(10): e1005865.

Starrett, G.J., Luengas, E.M., McCann, J.L., Ebrahimi, D., Temiz, N.A., Love, R.P., Feng, Y., Adolph, M.B., Chelico, L., Law, E.K., Carpenter, M.A., Harris, R.S. (2016)  The DNA cytosine deaminase APOBEC3H haplotype I likely contributes to breast and lung cancer mutagenesis. Nature Communications. 7: 12918.

Jiao, R., Lobanova, L., Waldner, A., Fu, A., Xiao, L., Harkness, T.A., Arnason, T.G. (2016) The ubiquitin-conjugating enzyme, Ubc1, indirectly regulates SNF1 kinase activity via Forkhead-dependent transcription. Microbial Cell 3: 409-421.

Xu, C., Kozlov, G., Wong, K., Gehring, K. and Cygler, M. (2016) Crystal Structure of the Salmonella Typhimurium Effector GtgE. PLoS One. 11(12):e0166643.

Grochulski, P., Cygler, M., Yates, B. (2016) Designing a synchrotron micro-focusing beamline for macromolecular crystallography. Postepy Biochem. 2016;62(3):395-400.

Alam, M.K., Alhhazmi, A., DeCoteau, J.F., Luo, Y., Geyer, C.R. (2016) RecA Inhibitors Potentiate Antibiotic Activity and Block Evolution of Antibiotic Resistance. Cell Chem Biol. 223(3):381-91.

Metin, A., Katselis, G., Chumala, P., Luo, Y. (2016). Characterization of N-Succinylation of Llysyl-
phosphatidylglycerol in Bacillus subtilis using tandem mass spectrometry. J. Am. Soc. Mass Spectrometry. 27(10): 1606-13.

Metin, A., Luo, Y. (2016). Profiling and tandem mass spectrometry analysis of aminoacylated
phospholipids in Bacillus subtilis . F1000Research. 5: 121.

Luo, Y. (2016). Alanylated lipoteichoic acid primer in Bacillus subtilis. F1000Research. 5: 155.

McFie, P.J., Ambilwade, P., Vu, H., Stone, S.J. (2016) Endoplasmic reticulum-mitochondrial interaction mediated by mitofusin-1 or mitofusin-2 is not required for lipid droplet formation or adipocyte differentiation. Biochem Biophys Res Commun. 478(1):392-7.

McFie, P.J., Izzard, S., Vu, H., Jin, Y., Beauchamp, E., Berthiaume, L.G., Stone, S.J. (2016) Membrane topology of human monoacylglycerol acyltransferase-2 and identification of regions important for its localization to the endoplasmic reticulum. Biochim Biophys Acta. 1861(9 Pt A):1192-204.

Brandt C, McFie PJ, Stone SJ. (2016) Biochemical characterization of human acyl coenzyme A: 2-monoacylglycerol acyltransferase-3 (MGAT3). Biochem Biophys Res Commun. 475(3):264-70.

Uppalapati M, Lee DJ, Mandal K, Li H, Miranda LP, Lowitz J, Kenney J, Adams JJ, Ault-Riché D, Kent SB, Sidhu SS. (2016) A Potent d-Protein Antagonist of VEGF-A is Nonimmunogenic, Metabolically Stable, and Longer-Circulating in Vivo. ACS Chem Biol. 11(4):1058-65.

Al-Dulaymi, M.A., Chitanda, J.M., Mohammed-Saeid, W., Araghi, H.Y., Verrall, R.E., Grochulski, P., Badea, I. (2016) Di-peptide-modified gemini Surfactants as gene delivery vectors: exploring the role of the alkyl tail in their physicochemical behavior and biological activity. AAPS J. 18(5):1168-81.

Raja, R.B., Anusheela, V., Agasimani, S., Jaiswal, S., Thiruvengadam, T., Chibbar, R.N. and Ganesh Ram, S. (2016) Validation and applicability of single kernel based cut grain dip method for amylose determination in rice. Food Analytical Methods 10: 442 – 448.

Cory, A.T., Gangola, M.P., Anyia, A., Båga, M. and Chibbar, R.N. (2016) Genotype, environment and G x E interaction influence (1,3;1,4)-ß-D-glucan fine structure in barley (Hordeum vulgare L.) J Food Science and Agriculture 97: 743 – 752.

Kannan, U., Sharma, R., Khedikar, Y., Gangola, M.P., Ganeshan, S., Båga, M. and Chibbar, R.N. (2016) Differential expression of two galactinol synthase isoforms LcGolS1 and LcGolS2 in developing lentil (Lens culinaris Medik cv CDC Redberry) seeds.  Plant Physiology and Biochemistry 108: 422-433.

Gangola, M.P., Jaiswal, S., Kannan, U., Gaur, P.M. Bå, M. and Chibbar, R.N. (2016). Galactinol synthase enzyme activity influences raffinose family oligosaccharides (RFO) accumulation in developing chickpea (Cicer arietinuim L.) seeds. Phytochemistry 125: 88 – 98.

Jaiswal, S., Feng, R., Sammynaiken, R., Irvine, C., Bauer, R. and Chibbar, R.N. (2016) Synchrotron based high throughput screening method for mineral analysis in cereal and pulse grains meal.  Microchemical J.126: 509 - 514.

Novak, A., Boldizsar, Adam, E., Kozma-Bognar, L., Majlath, I, Båga, M., Toth, B, Chibbar, R. and Galiba, G. (2016) Light-quality and temperature-dependent CBF-14 gene expression modulates freezing tolerance in cereals. J. Expt. Botany 67: 1285 - 1295.

Raja, R.B., Agasimani, S., Anusheela, V., Thiruvengadam, V., Chibbar, R.N. and Ganesh Ram, S. (2016) TILLING and EcoTILLING for discovery of induced and natural variations in Sorghum genome.  In; The Sorghum Genome (eds) S. Rakshit and Y.-H. Wang. Springer International Publishing AG 2016 pp 257 – 267.

Chibbar, R.N., Jaiswal, S., Gangola, M. and Båga (2016) Carbohydrate Metabolism. In Wrigley, C., Corke, H., Seetharaman, K., Faubion, J (eds.) Encyclopedia of Food Grains, 2nd Edition, Oxford, Academic Press. Pp 161-173.